List of toolboxes
QMRITools packages
QMRITools contains various toolboxes dedicated to various quantitative MRI techniques. It supports import and export of various file formats, but the main file format on which the tools are built is *.nii. The main focus is on Diffusion tensor imaging, extended phase graph based T2 mapping, Dixon reconstruction and phosphorus spectroscopy. It also contains some general functions for de-noising of multidimensional data, masking and data processing.
A notebook listing all functions in each toolbox and their full documentation can be found here. The same documentation is available as online guide pages. All toolboxes are listed below and under each link a short description of each toolbox is given.
For specific workflows see automated muscle segmentation, Muscle-BIDS and diffusion gradient optimization.
- AmaresTools
- CardiacTools
- CoilTools
- DenoiseTools
- DixonTools
- ElastixTools
- FasciculationTools
- GeneralTools
- GradientTools
- IVIMTools
- JcouplingTools
- Legacy
- LoggingTools
- MaskingTools
- MuscleBidsTools
- NeuralNetworkTools
- NiftiTools
- PlottingTools
- ProcessingTools
- ReconstructionTools
- RelaxometryTools
- ScientificColorData
- SegmentationTools
- ShapeTools
- SimulationTools
- SpectroTools
- TaggingTools
- TensorTools
- TractographyTools