SegmentationTools
QMRITools package: functions for segmenting muscle data using convolutional neural networks.
MakeUnet — Makes a 2D or 3D UNET.
SegmentData — Segments out of phase Dixon muscle data.
TrainSegmentationNetwork ▪ AddLossLayer ▪ AugmentTrainingData ▪ ChangeNetDimensions ▪ DiceSimilarity ▪ MeanSurfaceDistance ▪ CropDatSeg ▪ GetTrainData ▪ SoftDiceLossLayer ▪ SplitDataForSegementation
ClassDecoder ▪ ClassEncoder ▪ ApplySegmentationNetwork ▪ FindPos ▪ FindSide ▪ DataToPatches ▪ PatchesToData ▪ PatchesToSegmentation ▪ NetDimensions ▪ PrintKernels
MakeClassImage ▪ MakeChannelImage ▪ MakeChannelClassImage ▪ PlotSegmentations